PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00005g05117.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 303aa    MW: 35288.3 Da    PI: 8.7206
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00005g05117.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.2e-0689112226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               k  lC ff + G+C  G +CkF+H+
  Peaxi162Scf00005g05117.1  89 KSILCEFFKA-GQCAKGFKCKFSHD 112
                               6679**7777.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.79E-687112IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-487113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15987114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-489113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.671159197IPR000571Zinc finger, CCCH-type
SMARTSM003566.8159196IPR000571Zinc finger, CCCH-type
PfamPF165435.5E-17217295IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MPPKQSKADI AKKQKVVEDK TFGLKNKNKS KNVQKYVQSL KQNVVPKTDP KKLDAKKKKE  60
EEKERERELN ELFKVAISQP KVPVGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNVQRKGE  120
KIDIFSDKRD EGKETMEDWD QETLEKVVAS KSEEYNKNKP TDIVCKHFLE AVEKKQYGWF  180
WSCPNGGKEC MYRHALPPGY ILKSQMKALL QEESEKMPIE EEIDEQRAKL TASTPLTTEL  240
FMEWKKKKME EREANLAKQR ADRAKNDRMS GRELFMSDAS WFVDDVGAYD KYDREEESEE  300
PPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400572e-56AC240057.1 Solanum tuberosum cultivar RH89-039-16 chromosome 9 clone RH186C17, complete sequence.
GenBankEU1805742e-56EU180574.1 Solanum lycopersicum clone BAC C09HBa0179M08, complete sequence.
GenBankHG9754482e-56HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755212e-56HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788679.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like isoform X2
RefseqXP_016463307.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like isoform X2
RefseqXP_009602548.10.0PREDICTED: zinc finger CCCH domain-containing protein 11 isoform X2
RefseqXP_009788678.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like isoform X1
RefseqXP_016463306.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like isoform X1
SwissprotQ0JHZ21e-168C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLK4CQB30.0K4CQB3_SOLLC; Uncharacterized protein
STRINGSolyc09g007230.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA568078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-135C3H family protein